PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_2AL_AE22E725E.3
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family NF-YB
Protein Properties Length: 292aa    MW: 30862.5 Da    PI: 6.6066
Description NF-YB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_2AL_AE22E725E.3genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YB178.36.8e-5676171297
                  NF-YB   2 reqdrflPianvsrimkkvlPanakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkvylkk 89 
                            +eqdrflPianvsrimk+ lPanakisk+aketvqecvsefisfvt+easdkcqrekrktingddllwa++tlGfe yv+plk+yl++
  Traes_2AL_AE22E725E.3  76 KEQDRFLPIANVSRIMKRSLPANAKISKEAKETVQECVSEFISFVTGEASDKCQREKRKTINGDDLLWAMTTLGFEVYVAPLKAYLNR 163
                            89************************************************************************************** PP

                  NF-YB  90 yrelegek 97 
                            yre+egek
  Traes_2AL_AE22E725E.3 164 YREVEGEK 171
                            ******97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.20.105.4E-5172175IPR009072Histone-fold
SuperFamilySSF471131.06E-3778177IPR009072Histone-fold
PfamPF008088.3E-2781145IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
PRINTSPR006158.5E-18109127No hitNo description
PROSITE patternPS006850112128IPR003956Transcription factor, NFYB/HAP3, conserved site
PRINTSPR006158.5E-18128146No hitNo description
PRINTSPR006158.5E-18147165No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 292 aa     Download sequence    Send to blast
MEIAPLDTSS THPLTRLLPV LLLLLLLASL DIFFSRRGAA SVDMKSRKSY GQQQSHLLSP  60
VGSPSSDNGG GDSPAKEQDR FLPIANVSRI MKRSLPANAK ISKEAKETVQ ECVSEFISFV  120
TGEASDKCQR EKRKTINGDD LLWAMTTLGF EVYVAPLKAY LNRYREVEGE KAAVVGGSRL  180
GDDDAHSSLS AAGDALAPQY THGAGDRGVQ DGDLGGHDAH VGLMMGVNMG FNPGTGTTFY  240
AAPGAAHGRR AYGGGEGARG IDFEAAFGGD RGKNGAGGER EFAGHLHGAV QW
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4g91_B7e-4576166292Transcription factor HapC (Eurofung)
4g92_B7e-4576166292Transcription factor HapC (Eurofung)
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB1246481e-124AB124648.1 Oryza sativa Indica Group Hd5 gene for Heading date 5, complete cds, cultivar:Kasalath.
GenBankAB1246491e-124AB124649.1 Oryza sativa Indica Group Hd5 mRNA for Heading date 5, complete cds, cultivar:Kasalath.
GenBankAY0621821e-124AY062182.1 Oryza sativa (indica cultivar-group) HAP3-like transcriptional-activator (HAP3b) mRNA, complete cds.
GenBankCP0126161e-124CP012616.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 8 sequence.
GenBankCT8377941e-124CT837794.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCRA121O04, full insert sequence.
GenBankKR8153501e-124KR815350.1 Oryza sativa days to heading 8 (DTH8) gene, partial cds.
GenBankKR8153511e-124KR815351.1 Oryza sativa days to heading 8 (DTH8) gene, partial cds.
GenBankLC0167121e-124LC016712.1 Oryza sativa Indica Group Hd5 gene for heading date 5, complete cds, cultivar: Qiu Zhao Zong.
GenBankLC0167131e-124LC016713.1 Oryza sativa Indica Group Hd5 gene for heading date 5, complete cds, cultivar: Tupa 121-3.
GenBankLC0167141e-124LC016714.1 Oryza sativa Indica Group Hd5 gene for heading date 5, complete cds, cultivar: Muha.
GenBankLC0167161e-124LC016716.1 Oryza sativa Indica Group Hd5 gene for heading date 5, complete cds, cultivar: Deng Pao Zhai.
GenBankLC0167181e-124LC016718.1 Oryza sativa Indica Group Hd5 gene for heading date 5, complete cds, cultivar: Naba.
GenBankLC0167191e-124LC016719.1 Oryza sativa Indica Group Hd5 gene for heading date 5, complete cds, cultivar: Bei Khe.
GenBankLC0167211e-124LC016721.1 Oryza sativa Indica Group Hd5 gene for heading date 5, complete cds, cultivar: Bleiyo.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002445142.15e-89hypothetical protein SORBIDRAFT_07g004740
TrEMBLA0A096ULH60.0A0A096ULH6_WHEAT; Uncharacterized protein
STRINGMLOC_57782.11e-173(Hordeum vulgare)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP20138331
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G14540.14e-62nuclear factor Y, subunit B3
Publications ? help Back to Top
  1. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]